Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs79009632 | chr14:59681380 | T/C | 0 | 487 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs79012714 | chr1:200506580 | C/A | 4.59E-10 | 490 | 15.17 | 19.83 | 9.57 | KM Plot |
| THCA | rs7902075 | chr10:81780241 | T/C | 0.000127 | 476 | 9.77 | 15.9 | 15.9 | KM Plot |
| THCA | rs79030172 | chr6:24475545 | A/T | 0 | 484 | 16.4 | 14.77 | 8.88 | KM Plot |
| THCA | rs79034310 | chr5:96206663 | T/C | 3.31E-6 | 487 | 15.17 | 16.9 | 20.83 | KM Plot |
| THCA | rs7903472 | chr10:105021474 | C/T | 1.19E-7 | 488 | 15.3 | 18.03 | 10.17 | KM Plot |
| THCA | rs79055220 | chr10:90931264 | G/GA | 0.000314 | 478 | 15.33 | 17.77 | 14.38 | KM Plot |
| THCA | rs79055540 | chr11:8592385 | T/C | 4.56E-5 | 488 | 15.9 | 16.38 | 20.07 | KM Plot |
| THCA | rs79059243 | chr14:59688148 | A/G | 0 | 488 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs79065115 | chr17:45855929 | C/G | 2.06E-5 | 483 | 15.13 | 17.07 | 16.97 | KM Plot |
| THCA | rs79077644 | chr2:216198957 | C/T | 3.72E-9 | 484 | 16.65 | 15.17 | 12.6 | KM Plot |
| THCA | rs79092103 | chr8:52443256 | G/T | 0.000194 | 481 | 16.37 | 14.7 | 9.95 | KM Plot |
| THCA | rs79093507 | chr1:91739457 | A/C | 1.15E-7 | 481 | 15.63 | 17.03 | 17.77 | KM Plot |
| THCA | rs79110134 | chr4:39467807 | G/A | 4.44E-15 | 489 | 15.9 | 17.38 | 6.1 | KM Plot |
| THCA | rs79140300 | chr4:39472786 | C/T | 4.55E-15 | 489 | 15.9 | 17.38 | 6.1 | KM Plot |